PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000404409
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 397aa    MW: 44573.2 Da    PI: 8.935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000404409genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.8e-54291571128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+ +yL kkv+ ++l++ +vi+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++  
  MDP0000404409  29 LPPGFRFHPTDEELILHYLVKKVACTPLPV-SVIAEVDIYKFDPWQLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPs 123
                    79****************************.99***************988899***************************************998 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kk Lvfykgr pkg kt+W+mheyrl
  MDP0000404409 124 gRRQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 157
                    78888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6425194IPR003441NAC domain
PROSITE profilePS5100561.29529194IPR003441NAC domain
PfamPF023657.6E-2730157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MKENXQNFXY RFPQTAPNVD AQNRXESSLP PGFRFHPTDE ELILHYLVKK VACTPLPVSV  60
IAEVDIYKFD PWQLPAKAAF GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKTIV  120
APSGRRQNVG VKKALVFYKG RPPKGIKTNW IMHEYRLPEN PNNHTTTNNH HRAMKLKDLS  180
MRLDDWVLCR IYKKSNVVTS AVALPSDQNQ EVQEEEDFLH DILSPSLKCP FTGLDHNIMS  240
TSNTSSLKPQ KSCSFSNLPD AMDYSLLTSI LADGQYSIPT GIGFQSTTPN KFSYSCTGST  300
XIGLDPQPLF NTDISSNSSS SHLLQTLPQY NGLNLPSSAP STENRLKRQH SITDDRGVLF  360
CPSKKYVNSN CSFTNTANSF LNQQLLLSSP SFHFQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B4e-722819616167NAC domain-containing protein 19
4dul_A4e-722819616167NAC domain-containing protein 19
1ut7_B4e-722819616167NO APICAL MERISTEM PROTEIN
1ut7_A4e-722819616167NO APICAL MERISTEM PROTEIN
1ut4_B4e-722819616167NO APICAL MERISTEM PROTEIN
1ut4_A4e-722819616167NO APICAL MERISTEM PROTEIN
3swp_D4e-722819619170NAC domain-containing protein 19
3swp_C4e-722819619170NAC domain-containing protein 19
3swp_B4e-722819619170NAC domain-containing protein 19
3swp_A4e-722819619170NAC domain-containing protein 19
3swm_D4e-722819619170NAC domain-containing protein 19
3swm_C4e-722819619170NAC domain-containing protein 19
3swm_B4e-722819619170NAC domain-containing protein 19
3swm_A4e-722819619170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144060.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981150.0KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366417.10.0PREDICTED: NAC transcription factor 29-like
SwissprotA0SPJ61e-87NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLS5RDR30.0S5RDR3_9R
STRINGPOPTR_0019s04690.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.17e-97NAC domain containing protein 47